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Description:
A low-volume mailing list used to announce new developments in Seattle Proteome Center proteomics tools.
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Feature addition to PIPE - Add GO Annotations
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Hi All,
I added a new feature to the PIPE as per a user's suggestion last
week. You'll find it in the "Operations" menu item. It is labeled
"Add GO Annotations". Using it, you are now able to retreive GO terms
based on their category (biological process, cellular component, etc)
AND by level (go levels 1 - 14). Also, and I suspect this will be the... more »
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SPC Tools Posters at World HUPO next week
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This upcoming week, the SPC software tools team will be presenting two posters at HUPO's 7th World Congress in Amsterdam: one on iProphet, presented by David (P-TUE-181), and the other on new TPP functionality, presented by me, Luis (P-TUE-163). Please feel free to drop by and say hello to me and David, and bring... more »
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name change
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Hi all, Just letting you know that I have changed my name from Josh to Natalie. I look forward to continuing to work with all of the great people here in our proteomics software community. Best, Natalie
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Trapper on Win64bit Problem
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Hi,
I installed the Trapper on a WinXP 64bit computer, looks ok. But when
I start to convert a file from AGILENT's QTOF, with the ChipHPLC, I
get the following error:
This application has requested the Runtime to terminate it in an
unusual way. Please contact the application's support team for more... more »
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interesting subversion news
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I just learned about an improved merge system appearing in subversion 1.5 that might make our lives a lot easier. Looks like there are still bugs to be ironed out, but definitely something we should keep an eye on. SF has some functionality to update the repository to 1.5, but I don't want to do that yet (especially as they're still unstable in general)... more »
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Announcing Trapper: Agilent MassHunter (.d)-to-mzXML converter
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I am very pleased to announce the public release of the mzXML converter for Agilent MassHunter raw data (.d directories), called "trapper" (as a play on the word "hunter"). This release is the result of a more than year-long collaboration between Agilent and the Aebersold Lab Seattle (SPC/ISB), which included extensive on-site... more »
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ProteoWizard paper avaliable
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Hello all, Parag has asked me to let you know that the ProteoWizard paper has been published. ProteoWizard (or "PWIZ") is a freely available set of code and tools for reading, converting, and processing raw MS data, with ability to output to mzXML and mzML 1.0. The TPP already relies on PWIZ for mzML, and in the future the TPP converters will be merged... more »
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new TPP release: 4.0.2
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The 4.0.x series has been updated with various bug fixes in the 4.0.2 release. Releases are available for native windows, cygwin (now deprecated), and linux/osx source from all the usual locations (please see below). Please note, *the native windows installer is recommended over cygwin.* Cygwin is only being released for a short while longer,... more »
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new TPP release: 4.0.1 -- includes Cygwin installer
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The 4.0.x series has been updated with various bug fixes in the 4.0.1 release. Releases are available for native windows, cygwin (now deprecated), and linux/osx source from all the usual locations (please see below). Please note, the native windows installer is recommended over cygwin. Cygwin is only being released for a short while longer,... more »
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Announcing TPP version 4.0.0: windows native code and installer
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We are very pleased to announce the public release of TPP version 4.0.0 (jetstream). Version 4 introduces some major improvements and changes that all users should be aware of: * The TPP executable programs are now build as native Windows. All programs should see some speed increases-- some quite substantial. Our thanks to... more »
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