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Description:
A low-volume mailing list used to announce new developments in Cytoscape.
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Release 1.0 of the Cytoscape plugin DomainGraph
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DomainGraph takes a protein interaction network as input and computes
and displays the underlying domain-domain interactions. Additionally,
it supports the integration of exon expression data measured using the
Affymetrix Human Exon 1.0 ST Array. This allows the analysis of
alternative splicing events and the characterization of their... more »
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Random Network Plugin Beta Release
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Hello everyone, We are very excited to release the Beta version of the Random Network Plugin, a Google Summer of Code Project. Our plugin can be used for three main tasks: (1) Creating random networks according to three main models (erdos-renyi, watts-strogatz, barabasi-albert). (2) Create a degree(in/out) preserved randomization of an existing networks.... more »
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Cytoscape programming job
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Hi Everyone, We're hiring a full-time Cytoscape developer here at UCSD. Here is the job posting: [link] Please contact me off list if you have any questions! thanks, Mike
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CCMB/NCIBI MiMI plugin 3.0 release
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The CCMB/NCIBI MiMI plugin 3.0 was released on June 16 2008 to
Cytoscape using the latest
version of mimiR2/geneR2 and pubmed_08n databases.
You can download MiMI plugin 3.0 from here:
[link]
MiMI plugin 3.0 has the following improvements:
1. Faster performance due to the use of pre-computed tables for gene... more »
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Cytoscape retreat registration and hotel block
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Hi everyone, Please remember to register for the Cytoscape retreat, Toronto July 16-19. [link] If you were having trouble registering, an issue with the site has recently been fixed. Hotel ----- We've negotiated a special rate at the Delta Chelsea hotel for the... more »
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CentiScaPe release: Centralities for Cytoscape
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Release 1.0 of the CentiScaPe plug-in, a plug-in to calculate network centralities. CentiScaPe is available at: [link] <[link]> Complex biological networks, such as intracellular signaling networks, are modeled by the evolution to accomplish a variety of different regulatory... more »
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Cytoscape software engineer, Pasteur Institute, Paris (France)
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The Systems Biology Group at the Pasteur Institute in Paris (France) has one-year vacancy for a software engineer. In collaboration with a number of groups in the United States, we are developing Cytoscape, the most popular open-source software platform for visualization and analysis of interaction networks. The person we are looking for will... more »
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JavaScriptEngine Plugin v0.01
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Hi. For JavaScript programmers, I've created another scripting engine for Cytoscape. JavaScriptEngine Plugin 0.01 is also a technology preview for future version of Cytoscape. This plugin is based on Rhino 1.7.1: [link] and BSF 2.4.0, so you can use this in both Java 5 and 6. You can... more »
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